TAP 1.1 – Protein Structure Validation

TAP 1.1

:: DESCRIPTION

TAP serves to validate the local torsion angles of a protein structure. The server computes both an overall conformational score of a protein structure and a confidence estimate.

::DEVELOPER

The BioComputing UP lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 TAP

:: MORE INFORMATION

Citation:

Silvio C.E. Tosatto and Roberto Battistutta.
TAP score: torsion angle propensity normalization applied to local protein structure evaluation.
BMC Bioinformatics, accepted for publication. (2007)

MHCBN 4.0 – Database of MHC/TAP Binding Peptides and T-cell Epitopes

MHCBN 4.0

:: DESCRIPTION

The MHCBN is a curated database consisting of detailed information about Major Histocompatibility Complex (MHC) Binding,Non-binding peptides and T-cell epitopes.The version 4.0 of database provides information about peptides interacting with TAP and MHC linked autoimmune diseases.

::DEVELOPER

MHCBN team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

  NO

:: MORE INFORMATION

Citation

MHCBN 4.0: A database of MHC/TAP binding peptides and T-cell epitopes.
Lata S, Bhasin M, Raghava GP.
BMC Res Notes. 2009 Apr 20;2:61. doi: 10.1186/1756-0500-2-61.

TAPPred – Predict Peptide TAP Binding Affinity

TAPPred

:: DESCRIPTION

 TAPPred is an on-line service for predicting binding affinity of peptides toward the TAP transporter. The Prediction is based on cascade SVM, using sequence and properties of the the amino acids

::DEVELOPER

TAPPred Team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

  NO

:: MORE INFORMATION

Citation

Bhasin,M. and Raghava, G.P.S. (2004)
Analysis and prediction of affinity of TAP binding peptides using cascade SVM.
Protein Sci.,13 (3),596-607.

TAP 1.8 – Calculate TAP and TAP-k to Evaluate Bioinformatics Retrieval Methods

TAP 1.8

:: DESCRIPTION

TAP calculates the TAP and TAP-k to evaluate bioinformatics retrieval methods.

::DEVELOPER

Statistical Computational Biology Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / WIndows / MacOsX
  • Perl

:: DOWNLOAD

  TAP

:: MORE INFORMATION

Citation

H.D. Carroll, M.G. Kann, S.L. Sheetlin, and J.L. Spouge
Threshold Average Precision (TAP-k): a Measure of Retrieval Efficacy Designed for Bioinformatics
(2010) Bioinformatics 26 : 1708-1713

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