ChiLay 2.0 – Automated Layout of Process Description Maps Drawn in SBGN

ChiLay 2.0

:: DESCRIPTION

ChiLay (Chisio Layout) is a free, open source graphics/rendering independent Java component, which can be used by interactive graph editing tools to automatically layout compound or clustered graphs as well as simple, flat graphs

::DEVELOPER

i-Vis (Information Visualization) Research Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows/Linux/MacOsX
Java

:: DOWNLOAD

ChiLay

:: MORE INFORMATION

Citation

An Algorithm for Automated Layout of Process Description Maps Drawn in SBGN.
Genc B, Dogrusoz U.
Bioinformatics. 2015 Sep 10. pii: btv516.

LibSBGN Milestone 3.2 – Standard Electronic Implementation for SBGN

LibSBGN Milestone 3.2

:: DESCRIPTION

LibSBGN is a software library for reading, writing and manipulating Systems Biology Graphical Notation (SBGN) maps stored using the recently developed SBGN-ML file format.

::DEVELOPER

LibSBGN team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows/Linux/MacOsX

:: DOWNLOAD

LibSBGN

:: MORE INFORMATION

Citation

Software support for SBGN maps: SBGN-ML and LibSBGN.
van Iersel MP, Villéger AC, Czauderna T, Boyd SE, Bergmann FT, Luna A, Demir E, Sorokin A, Dogrusoz U, Matsuoka Y, Funahashi A, Aladjem MI, Mi H, Moodie SL, Kitano H, Le Novère N, Schreiber F.
Bioinformatics. 2012 Aug 1;28(15):2016-21. Epub 2012 May 10.

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