Tag: layout

ChiLay 2.0 – Automated Layout of Process Description Maps Drawn in SBGN

ChiLay 2.0

:: DESCRIPTION

ChiLay (Chisio Layout) is a free, open source graphics/rendering independent Java component, which can be used by interactive graph editing tools to automatically layout compound or clustered graphs as well as simple, flat graphs

::DEVELOPER

i-Vis (Information Visualization) Research Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Java

:: DOWNLOAD

 ChiLay

:: MORE INFORMATION

Citation

An Algorithm for Automated Layout of Process Description Maps Drawn in SBGN.
Genc B, Dogrusoz U.
Bioinformatics. 2015 Sep 10. pii: btv516.

tcsBU – Extend TCS Network Layout and Visualization

tcsBU

:: DESCRIPTION

tcsBU is a web-based program that extends the capabilities of TCS, by implementing haplotype classification into an arbitrary user-defined scheme, which is displayed as pie-chart like graphs embedded into the network.

::DEVELOPER

CIBIO – Research Centre in Biodiversity and Genetic Resource

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

tcsBU: a tool to extend TCS network layout and visualization.
Santos AM, Cabezas MP, Tavares AI, Xavier R, Branco M.
Bioinformatics. 2015 Oct 29. pii: btv636.

OptiMage 1.1 – Tool for Producing 3D Layouts of network date

OptiMage 1.1

:: DESCRIPTION

OptiMage is a tool for producing 3D layouts of network data. It can work with simple interaction data (e.g. protein-protein interactions), but can also be used to visualize directed networks, phylogenetic trees or distance matrices (e.g. evolutionary distances between genes).

::DEVELOPER

John Pinney

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / MacOsX / Windows
  • Java

:: DOWNLOAD

 OptiMage

:: MORE INFORMATION

Citation

BJ Holden, JW Pinney, SC Lovell, GD Amoutzias and DL Robertson
An exploration of alternative visualisations of the basic helix-loop-helix protein interaction network (2007)
BMC Bioinformatics 8:289

 

Reposition 0.02 – Cytoscape Plugin for reuse of layouts

Reposition 0.02

:: DESCRIPTION

Reposition is an open source Cytoscape Plugin for the reuse of existing Cytoscape network layouts in new Cytoscape projects.

::DEVELOPER

Andreas Hoppe

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

Reposition

:: MORE INFORMATION

N/A

 

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