Tag: Retention

IRFinder-S v2.0-beta – Detecting Intron Retention

IRFinder-S v2.0-beta

:: DESCRIPTION

IRFinder-S is a suite of tools to analyse and explore intron retention events in multiple samples.

::DEVELOPER

the Center for Genomic Medicine of Massachusetts General Hospital

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • R
  • Perl

:: DOWNLOAD

IRFinder-S

:: MORE INFORMATION

Citation

Lorenzi C, Barriere S, Arnold K, Luco RF, Oldfield AJ, Ritchie W.
IRFinder-S: a comprehensive suite to discover and explore intron retention.
Genome Biol. 2021 Nov 8;22(1):307. doi: 10.1186/s13059-021-02515-8. PMID: 34749764.

Middleton R, Gao D, Thomas A, Singh B, Au A, Wong JJ, Bomane A, Cosson B, Eyras E, Rasko JE, Ritchie W.
IRFinder: assessing the impact of intron retention on mammalian gene expression.
Genome Biol. 2017 Mar 15;18(1):51. doi: 10.1186/s13059-017-1184-4. PMID: 28298237; PMCID: PMC5353968.

COMSPARI 20031215 – Comparison of Spectral and Retention Information

COMSPARI 20031215

:: DESCRIPTION

COMSPARI (COMparison of SPectral And Retention Information) is a software that has been written to facilitate the analysis of “paired” samples, i.e. samples that are almost identical yet present some qualitative difference. The software was originally written for the analysis of data files produced by GC/MS and LC/MS, but can be used for other techniques, too.

::DEVELOPER

COMSPARI Team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 COMSPARI

:: MORE INFORMATION

Citation

J Am Soc Mass Spectrom. 2004 Apr;15(4):580-4.
A new technique (COMSPARI) to facilitate the identification of minor compounds in complex mixtures by GC/MS and LC/MS: tools for the visualization of matched datasets.
Katz JE, Dumlao DS, Clarke S, Hau J.

Exit mobile version