:: DESCRIPTION
EnzymeX helps molecular biologists determine which restriction enzymes they should use to cut their DNA of interest, along with complete DNA sequence analysis and editing.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
REDseq includes functions to build restriction enzyme cut site (RECS) map, distribute mapped sequences on the map with five different approaches, find enriched/depleted RECSs for a sample, and identify differentially enriched/depleted RECSs between samples.
::DEVELOPER
Program in Gene Function and Expression@umassmed
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Chen PB, Zhu LJ, Hainer SJ, McCannell KN, Fazzio TG.
Unbiased chromatin accessibility profiling by RED-seq uncovers unique features of nucleosome variants in vivo.
BMC Genomics. 2014 Dec 15;15(1):1104. doi: 10.1186/1471-2164-15-1104. PMID: 25494698; PMCID: PMC4378318.
:: DESCRIPTION
Mutant Design is an excel macro of restriction enzyme / codon optimization for mutant protein design.
::DEVELOPER
Institute for Genomics and Bioinformatics, University of California
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
REPK (Restriction Endonuclease Picker) finds sets of 4 commercially available restriction endonucleases which together uniquely differentiate designated sequence groups from a supplied FASTA format sequence file for use in T-RFLP. If you have a database of known sequences from an environment, this program could be useful to pick some enzymes that uniquely discriminate the different groups in your database.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Collins, R. E. and G. Rocap. 2007.
REPK: an analytical web server to select restriction endonucleases for terminal restriction fragment length polymorphism analysis.
Nucleic Acids Res. 35 (Database issue): W58-W62; doi:10.1093/nar/gkm384
:: DESCRIPTION
REtools is a user friendly and easily customized program to organize any laboratory enzyme stock, brings a software solution that makes restriction enzyme use and reaction condition determination straightforward and efficient.
The usually unexplored potential of isoschizomers becomes accessible to all, since REtools proposes all possible enzymes similar to the one(s) chosen by the user. Finally, many of the commonly overlooked subtleties of restriction enzyme work, such as methylation requirement, unusual reaction conditions, as well as the number of flanking bases required for cleavage, are automatically provided by REtools.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
REtools: A laboratory program for restriction enzyme work: enzyme selection and reaction condition assistance. BMC Bioinformatics 2006 Feb; 7:98
Any comment and/or proposal concerning this application is welcome! Please contact P. Pognonec for additional information.
