REDseq 1.36.0 – Analysis of High-throughput Sequencing data processed by Restriction Enzyme Digestion

REDseq 1.36.0

:: DESCRIPTION

REDseq includes functions to build restriction enzyme cut site (RECS) map, distribute mapped sequences on the map with five different approaches, find enriched/depleted RECSs for a sample, and identify differentially enriched/depleted RECSs between samples.

::DEVELOPER

Program in Gene Function and Expression@umassmed

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • BioConductor
  • R package

:: DOWNLOAD

 REDseq

:: MORE INFORMATION

Citation:

Chen PB, Zhu LJ, Hainer SJ, McCannell KN, Fazzio TG.
Unbiased chromatin accessibility profiling by RED-seq uncovers unique features of nucleosome variants in vivo.
BMC Genomics. 2014 Dec 15;15(1):1104. doi: 10.1186/1471-2164-15-1104. PMID: 25494698; PMCID: PMC4378318.

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