NGS QC Toolkit v2.3.3 – Toolkit for the Quality Control (QC) of Next Generation Sequencing (NGS) data.

NGS QC Toolkit v2.3.3

:: DESCRIPTION

NGS QC Toolkit comprises of user-friendly stand alone tools for quality control of the sequence data generated using Illumina and Roche 454 platforms with detailed results in the form of tables and graphs, and filtering of high-quality sequence data. It also includes few other tools, which are helpful in NGS data quality control and analysis.

::DEVELOPER

Mukesh Jain (mjain@nipgr.ac.in); Ravi Patel (ravi_patel_4@yahoo.co.in) @ National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, India

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • Perl

:: DOWNLOAD

 NGS QC Toolkit

:: MORE INFORMATION

Citation

PLoS One. 2012;7(2):e30619. doi: 10.1371/journal.pone.0030619. Epub 2012 Feb 1.
NGS QC Toolkit: a toolkit for quality control of next generation sequencing data.
Patel RK1, Jain M.

EIGENSOFT plus 1.0 – Principal Components Analysis for Performing GWAS QC and primary analysis.

EIGENSOFT plus 1.0

:: DESCRIPTION

EIGENSOFTplus is a software for enhanced use of Principal Components Analysis for performing GWAS QC and primary analysis.

::DEVELOPER

 Dr Michael Weale’s Group

:: SCREENSHOTS

N/A

::REQUIREMENTS

:: DOWNLOAD

 EIGENSOFTplus

:: MORE INFORMATION

Citation

Weale ME (2010),
“Quality Control for Genome-Wide Association Studies”,
in Genetic Variation: Methods and Protocols, Methods in Molecular Biology, vol. 628, pp.341-372 (Eds. M. R. Barnes and G. Breen). Humana Press.

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