Tag: PSEUDO

iNuc-PseKNC – Predicting Nucleosomes with Pseudo K-tuple Nucleotide Composition

iNuc-PseKNC

:: DESCRIPTION

The web-server iNuc-PseKNC was developed to predict nucleosome occupancy of H. sapiens, C. elegan and D. melanogaster

::DEVELOPER

LinDing Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition.
Guo SH, Deng EZ, Xu LQ, Ding H, Lin H, Chen W, Chou KC.
Bioinformatics. 2014 Jun 1;30(11):1522-9. doi: 10.1093/bioinformatics/btu083.

PseKNC-General – Generating various modes of Pseudo Nucleotide Compositions

PseKNC-General

:: DESCRIPTION

PseKNC-General (the general form of pseudo k-tuple nucleotide composition) is a cross-platform standalone and open-source package that can be used to represent a DNA or RNA sequence with a discrete model or vector yet still keeping considerable sequence-order information, particularly the global or long-range sequence-order information via the physicochemical properties of its constituent oligonucleotides.

::DEVELOPER

LinDing Group

:: SCREENSHOTS

PseKNC-General

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Java

:: DOWNLOAD

 PseKNC-General

:: MORE INFORMATION

Citation

PseKNC-General: A cross-platform package for generating various modes of pseudo nucleotide compositions.
Chen W, Zhang X, Brooker J, Lin H, Zhang L, Chou KC.
Bioinformatics. 2015 Jan 1;31(1):119-20. doi: 10.1093/bioinformatics/btu602

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