:: DESCRIPTION
iEsGene-ZCPseKNC is a webserver which can identify essential gene for archaea.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Chen J, et al.
iEsGene-ZCPseKNC: identify archaea essential genes based on Z curve pseudo k-tuple nucleotide composition,
IEEE ACCESS 2019; 7:165241-165247.
:: DESCRIPTION
The PseKNC (pseudo oligonucleotide composition, or pseudo K-tuple nucleotide composition), can be used to represent a DNA or RNA sequence with a discrete model or vector yet still keep considerable sequence order information, particularly the global or long-range sequence order information, via the physicochemical properties of its constituent oligonucleotides.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
PseKNC: A flexible web server for generating pseudo K-tuple nucleotide composition.
Chen W, Lei TY, Jin DC, Lin H, Chou KC.
Anal Biochem. 2014 Jul 1;456:53-60. doi: 10.1016/j.ab.2014.04.001.
:: DESCRIPTION
PseKNC-General (the general form of pseudo k-tuple nucleotide composition) is a cross-platform standalone and open-source package that can be used to represent a DNA or RNA sequence with a discrete model or vector yet still keeping considerable sequence-order information, particularly the global or long-range sequence-order information via the physicochemical properties of its constituent oligonucleotides.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
PseKNC-General: A cross-platform package for generating various modes of pseudo nucleotide compositions.
Chen W, Zhang X, Brooker J, Lin H, Zhang L, Chou KC.
Bioinformatics. 2015 Jan 1;31(1):119-20. doi: 10.1093/bioinformatics/btu602
:: DESCRIPTION
iPro54-PseKNC is a sequence-based predictor for identifying σ54 promoters with pseudo k-tuple nucleotide composition
::DEVELOPER
:: SCREENSHOTS
n/a
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition.
Lin H, Deng EZ, Ding H, Chen W, Chou KC.
Nucleic Acids Res. 2014 Dec 1;42(21):12961-72. doi: 10.1093/nar/gku1019
:: DESCRIPTION
SPuNC (Structure Prediction using Nucleotide Composition) provides a method for RNA structure prediction using evolutionary patterns of nucleotide composition.
::DEVELOPER
The Centre for Integrative Bioinformatics VU
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Sandra Smit, Rob Knight, and Jaap Heringa
RNA structure prediction from evolutionary patterns of nucleotide composition.
NAR (2009) 37(5):1378-86
