iEsGene-ZCPseKNC – Identify eseential Genes based on Z curve pseudo k-tuple nucleotide composition

iEsGene-ZCPseKNC

:: DESCRIPTION

iEsGene-ZCPseKNC is a webserver which can identify essential gene for archaea.

::DEVELOPER

Liu Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Chen J, et al.
iEsGene-ZCPseKNC: identify archaea essential genes based on Z curve pseudo k-tuple nucleotide composition,
IEEE ACCESS 
2019; 7:165241-165247.

miRNA-deKmer – Identification of microRNA precursor with the degenerate K-tuple or Kmer strategy

miRNA-deKmer

:: DESCRIPTION

miRNA-deKmer is a web server of identification of microRNA precursor with the degenerate K-tuple or Kmer strategy.

::DEVELOPER

Liu Lab, Harbin Institute of Technology Shenzhen Graduate School.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Identification of microRNA precursor with the degenerate K-tuple or Kmer strategy.
Liu B, Fang L, Wang S, Wang X, Li H, Chou KC.
J Theor Biol. 2015 Nov 21;385:153-9. doi: 10.1016/j.jtbi.2015.08.025.

PseKNC – Generating Pseudo K-tuple Nucleotide Composition

PseKNC

:: DESCRIPTION

The PseKNC (pseudo oligonucleotide composition, or pseudo K-tuple nucleotide composition), can be used to represent a DNA or RNA sequence with a discrete model or vector yet still keep considerable sequence order information, particularly the global or long-range sequence order information, via the physicochemical properties of its constituent oligonucleotides.

::DEVELOPER

LinDing Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

PseKNC: A flexible web server for generating pseudo K-tuple nucleotide composition.
Chen W, Lei TY, Jin DC, Lin H, Chou KC.
Anal Biochem. 2014 Jul 1;456:53-60. doi: 10.1016/j.ab.2014.04.001.

iNuc-PseKNC – Predicting Nucleosomes with Pseudo K-tuple Nucleotide Composition

iNuc-PseKNC

:: DESCRIPTION

The web-server iNuc-PseKNC was developed to predict nucleosome occupancy of H. sapiens, C. elegan and D. melanogaster

::DEVELOPER

LinDing Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition.
Guo SH, Deng EZ, Xu LQ, Ding H, Lin H, Chen W, Chou KC.
Bioinformatics. 2014 Jun 1;30(11):1522-9. doi: 10.1093/bioinformatics/btu083.

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