PDIviz 1.2.3 – Visualization of Protein-DNA Binding Interfaces

PDIviz 1.2.3

:: DESCRIPTION

PDIviz is a plugin for the PyMOL molecular visualization system that is specifically designed to visualize protein-DNA interfaces in three dimensions. PDIviz detects the interface of protein-DNA complexes by calculating the buried surface area directly in PyMOL.

::DEVELOPER

MBL – Laboratorio de Bioinformática

:: SCREENSHOTS

:: REQUIREMENTS

Windows/Linux/MacOsX
Python
PyMOL

:: DOWNLOAD

PDIviz

:: MORE INFORMATION

Citation

Bioinformatics. 2015 Apr 16. pii: btv203.
PDIviz: Analysis and visualization of protein-DNA binding interfaces.
Ribeiro J, Melo F, Schüller A

MixChIP – Cell Type Specific Protein-DNA Binding analysis

MixChIP

:: DESCRIPTION

MixChIP is a probabilistic method for identifying cell type specific TF binding sites from heterogeneous chromatin immunoprecipitation sequencing (ChIP-seq) data.