:: DESCRIPTION
Prof is a software for protein secondary structure prediction .
::DEVELOPER
Mohammed OUALI & Prof Ross King
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Protein Sci. 2000 Jun;9(6):1162-76.
Cascaded multiple classifiers for secondary structure prediction.
Ouali M, King RD.
:: DESCRIPTION
MEGADOCK is an fft-based protein-protein docking system for all-to-all protein-protein interaction predictions.
MEGADOCK-K is an MEGADOCK on K computer
MEGADOCK-GPU is an ultra-fast protein-protein docking software on GPUs.
::DEVELOPER
Akiyama Laboratory, Tokyo Institute of Technology
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: MORE INFORMATION
Citation
MEGADOCK 4.0: an ultra-high-performance protein-protein docking software for heterogeneous supercomputers.
Ohue M, Shimoda T, Suzuki S, Matsuzaki Y, Ishida T, Akiyama Y.
Bioinformatics. 2014 Aug 6. pii: btu532.
MEGADOCK 3.0: a high-performance protein-protein interaction prediction software using hybrid parallel computing for petascale supercomputing environments.
Matsuzaki Y, Uchikoga N, Ohue M, Shimoda T, Sato T, Ishida T, Akiyama Y.
Source Code Biol Med. 2013 Sep 3;8(1):18
MEGADOCK: An All-to-all Protein-protein Interaction Prediction System Using Tertiary Structure Data.
Ohue M, Matsuzaki Y, Uchikoga N, Ishida T, Akiyama Y.
Protein Pept Lett. 2013 Jul 9
Takehiro Shimoda, Takashi Ishida, Shuji Suzuki, Masahito Ohue, Yutaka Akiyama.
MEGADOCK-GPU: An accelerated protein-protein docking calculation on GPUs,
Parallel and Cloud-based Bioinformatics and Biomedicine, 2013. (accepted)
:: DESCRIPTION
PCAj (Principal component analysis for Japanese)predicts population structure of Japanese samples using genome-wide SNP genotypes. It creates a 2D scatterplot of predicted principal components based on the probabilistic PCA.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Kumasaka et al. (2010)
Establishment of a Standardized System to Perform Population Structure Analyses with Limited Sample Size or with Different Sets of SNP Genotypes.
Journal of Human Genetics, 55(8):525-33.
:: DESCRIPTION
PROSPECT (PROtein Structure Prediction and Evaluation Computer Toolkit) is a threading-based protein structure prediction system. PROSPECT is designed particularly for the recognization of the fold template whose sequence has insignificant homology to the target sequence.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
D. Kim, D. Xu, J. Guo, K. Ellrott, Ying Xu,
“PROSPECT II: protein structure prediction program for genome-scale application“,
Protein Engineering, 16 (9), 641 – 650, 2003
