Wombac 2.1 – Bacterial core Genome SNPs for Phylogenomic Trees from NGS Reads and/or draft genomes

Wombac 2.1

:: DESCRIPTION

Wombac rapidly finds core genome SNPs from samples and produces an alignment of those SNPs which can be used to build a phylogenomic tree.

::DEVELOPER

Torsten Seemann

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl
  • bwa mem
  • samtools

:: DOWNLOAD

 Wombac

:: MORE INFORMATION

PhyloToL 3.0 – Phylogenomic Tree of Life

PhyloToL 3.0

:: DESCRIPTION

PhyloToL is a phylogenomic pipeline to allow easy incorporation of data from HTS studies, to automate production of both MSAs and gene trees, and to identify and remove contaminants.

::DEVELOPER

Katzlab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python
  • BioPython
  • Perl
  • BioPerl

:: DOWNLOAD

PhyloToL

:: MORE INFORMATION

Citation:

Mol Biol Evol. 2019 Aug 1;36(8):1831-1842. doi: 10.1093/molbev/msz103.
PhyloToL: A Taxon/Gene-Rich Phylogenomic Pipeline to Explore Genome Evolution of Diverse Eukaryotes.
Cerón-Romero MA, Maurer-Alcalá XX, Grattepanche JD, Yan Y, Fonseca MM, Katz LA.

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