Wombac 2.1 – Bacterial core Genome SNPs for Phylogenomic Trees from NGS Reads and/or draft genomes Wombac 2.1 :: DESCRIPTION Wombac rapidly finds core genome SNPs from samples and produces an alignment of those SNPs which can be used to build a phylogenomic tree. ::DEVELOPER Torsten Seemann :: SCREENSHOTS N/A :: REQUIREMENTS Linux Perl bwa mem samtools :: DOWNLOAD Wombac :: MORE INFORMATION
PhyloToL 3.0 – Phylogenomic Tree of Life PhyloToL 3.0 :: DESCRIPTION PhyloToL is a phylogenomic pipeline to allow easy incorporation of data from HTS studies, to automate production of both MSAs and gene trees, and to identify and remove contaminants. ::DEVELOPER Katzlab :: SCREENSHOTS N/A :: REQUIREMENTS Linux Python BioPython Perl BioPerl :: DOWNLOAD PhyloToL :: MORE INFORMATION Citation: Mol Biol Evol. 2019 Aug 1;36(8):1831-1842. doi: 10.1093/molbev/msz103. PhyloToL: A Taxon/Gene-Rich Phylogenomic Pipeline to Explore Genome Evolution of Diverse Eukaryotes. Cerón-Romero MA, Maurer-Alcalá XX, Grattepanche JD, Yan Y, Fonseca MM, Katz LA.