loctree3 – Protein Sub-cellular Localization Prediction for all Domains of Life

LocTree3

:: DESCRIPTION

LocTree3 that predicts localization for all proteins in all domains of life. We incorporate a system of hierarchically organized Support Vector Machines to mimic the protein trafficking mechanism in cells.

::DEVELOPER

the Rostlab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Mac OsX

:: DOWNLOAD

  LocTree3

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W350-5. doi: 10.1093/nar/gku396.
LocTree3 prediction of localization.
Goldberg T et cl.

PhyloToL 3.0 – Phylogenomic Tree of Life

PhyloToL 3.0

:: DESCRIPTION

PhyloToL is a phylogenomic pipeline to allow easy incorporation of data from HTS studies, to automate production of both MSAs and gene trees, and to identify and remove contaminants.

::DEVELOPER

Katzlab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python
  • BioPython
  • Perl
  • BioPerl

:: DOWNLOAD

PhyloToL

:: MORE INFORMATION

Citation:

Mol Biol Evol. 2019 Aug 1;36(8):1831-1842. doi: 10.1093/molbev/msz103.
PhyloToL: A Taxon/Gene-Rich Phylogenomic Pipeline to Explore Genome Evolution of Diverse Eukaryotes.
Cerón-Romero MA, Maurer-Alcalá XX, Grattepanche JD, Yan Y, Fonseca MM, Katz LA.

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