PhyloPro – Generation and Visualization of Phylogenetic Profiles across Eukarya

PhyloPro

:: DESCRIPTION

PhyloPro allows the user to rapidly identify core conserved elements of biological processes together with those that may represent lineage-specific innovations.

::DEVELOPER

Parkinson lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Bioinformatics. 2011 Mar 15;27(6):877-8. doi: 10.1093/bioinformatics/btr023. Epub 2011 Jan 19.
PhyloPro: a web-based tool for the generation and visualization of phylogenetic profiles across Eukarya.
Xiong X, Song H, On T, Lochovsky L, Provart NJ, Parkinson J.

ProPhylo 1.02 – Phylogenetic Profile comparison program using Partial Phylogenetic Profile algorithm

ProPhylo 1.02

:: DESCRIPTION

ProPhylo is a high-performance parallel software to run phylogenetic profile searches at genome-scale.

::DEVELOPER

Malay K Basu

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux
Perl

:: DOWNLOAD

ProPhylo

:: MORE INFORMATION

Citation

Basu, M. K., Selengut, J. D., Haft, D. H.
ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process
BMC Bioinformatics. 2011 Dec 01; 12: 434.

Count 10.04 – Evolutionary Analysis of Phylogenetic Profiles and Other Numerical Characters

Count 10.04

:: DESCRIPTION

Count is a software package for the evolutionary analysis of homolog family sizes (phylogenetic profiles), or other numerical census-type characters along a phylogeny. The principal data consist of the distribution of homolog family sizes across multiple genomes: for each (gene) family, that table gives the number of homologs identified in each genome.

::DEVELOPER

Miklós Csűrös.

:: SCREENSHOTS

:: REQUIREMENTS

MacOsX / Linux /Windows
Java

:: DOWNLOAD

Count

:: MORE INFORMATION

Citation

Bioinformatics. 2010 Aug 1;26(15):1910-2. doi: 10.1093/bioinformatics/btq315. Epub 2010 Jun 15.
Count: evolutionary analysis of phylogenetic profiles with parsimony and likelihood.
Csurös M.