:: DESCRIPTION
PIPINO is a software package to facilitate the identification of protein-protein interactions from affinity purification mass spectrometry data.
::DEVELOPER
BioInformatics Group Mittweida
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
OPTIMIZER is an on-line PHP application that optimizes the codon usage of a DNA sequence to increase its expression level.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Puigbò P., Guzmán E.Romeu A. and Garcia-Vallvé S. 2007
OPTIMIZER: A web server for optimizing the codon usage of DNA sequences.
Nucleic Acids Research, 35:W126-W131.
:: DESCRIPTION
DiMO is discriminative motif optimizer.
DAMO (Discriminative Additive Model Optimization)is a Python implementation of the Discriminative Motif Optimizer (DiMO) program and extends it to include adjacent di-nucleotide interactions.
::DEVELOPER
Stormo Lab in Department of Genetics, Washington University
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2014 Apr 1;30(7):941-8. doi: 10.1093/bioinformatics/btt748. Epub 2013 Dec 24.
Discriminative motif optimization based on perceptron training.
Patel RY1, Stormo GD.
BMC Bioinformatics. 2018 Mar 6;19(1):86. doi: 10.1186/s12859-018-2104-7.
Comparison of discriminative motif optimization using matrix and DNA shape-based models.
Ruan S, Stormo GD
