Tag: DiMO

DiMO 1.6 / DAMO- Discriminative Motif Optimizer

DiMO 1.6 / DAMO

:: DESCRIPTION

DiMO is discriminative motif optimizer.

DAMO (Discriminative Additive Model Optimization)is a Python implementation of the Discriminative Motif Optimizer (DiMO) program and extends it to include adjacent di-nucleotide interactions.

::DEVELOPER

Stormo Lab in Department of Genetics, Washington University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows/ MacOsX
  • R
  • Python

:: DOWNLOAD

 DiMO, DAMO

:: MORE INFORMATION

Citation

Bioinformatics. 2014 Apr 1;30(7):941-8. doi: 10.1093/bioinformatics/btt748. Epub 2013 Dec 24.
Discriminative motif optimization based on perceptron training.
Patel RY1, Stormo GD.

BMC Bioinformatics. 2018 Mar 6;19(1):86. doi: 10.1186/s12859-018-2104-7.
Comparison of discriminative motif optimization using matrix and DNA shape-based models.
Ruan S, Stormo GD

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