:: DESCRIPTION
SNPGenie is a program to estimate evolutionary parameters from pooled next-generation sequencing (NGS) data.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
SNPGenie: estimating evolutionary parameters to detect natural selection using pooled next-generation sequencing data.
Nelson CW, Moncla LH, Hughes AL.
Bioinformatics. 2015 Jul 29. pii: btv449.
:: DESCRIPTION
seqMINER is an integrated user friendly platform that allows addressing central questions in the ChIP-seq analysis workflow. The design of seqMINER was made in order to make it as easy as possible for an investigator to reach high level of interpretation on his dataset to answer its biological question at best.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Nucleic Acids Res. 2011 Mar;39(6):e35. doi: 10.1093/nar/gkq1287. Epub 2010 Dec 21.
seqMINER: an integrated ChIP-seq data interpretation platform.
Ye T, Krebs AR, Choukrallah MA, Keime C, Plewniak F, Davidson I, Tora L.
:: DESCRIPTION
Simplifier is a stand-alone software that selectively eliminates redundant sequences from the collection of contigs generated by ab initio assembly of genomes.
::DEVELOPER
Prof. Rommel Ramos
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformation. 2012;8(20):996-9. doi: 10.6026/97320630008996. Epub 2012 Oct 13.
Simplifier: a web tool to eliminate redundant NGS contigs.
Ramos RT, Carneiro AR, Azevedo V, Schneider MP, Barh D, Silva A.
:: DESCRIPTION
SnpStore is a program for SNP and indel calling in mapped next-generation sequencing read data. It features a simple threshold-based model for SNP and indel calling, and a MAQ-like Bayesian model for SNP genotype calling.
::DEVELOPER
Anne-Katrin Emde, Tobias Rausch, Stefan Haas, and Knut Reinert
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
ngs_backbone is a bioinformatic application created to work on sequence analysis by using NGS (Next Generation Sequencing) and sanger sequences. It is capable of cleaning reads, do de novo assembly or mapping against a reference and annotate SNPs, SSRs, ORFs, GO terms and sequence descriptions.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
BMC Genomics. 2011 Jun 2;12:285. doi: 10.1186/1471-2164-12-285.
ngs_backbone: a pipeline for read cleaning, mapping and SNP calling using next generation sequence.
Blanca JM, Pascual L, Ziarsolo P, Nuez F, Cañizares J.
