Tag: Eliminate

TagDust 2.33 – Extracts Mappable Reads from NGS gata.

TagDust 2.33

:: DESCRIPTION

TagDust is a program to eliminate artifactual reads from next-generation sequencing data sets.

::DEVELOPER

FANTOM

:: SCREENSHOTS

N/A

::  REQUIREMENTS

  • Linux

:: DOWNLOAD

 TagDust

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2015 Jan 28;16(1):24.
TagDust2: a generic method to extract reads from sequencing data.
Lassmann T

Lassmann T., et al. (2009)
TagDust – A program to eliminate artifacts from next generation sequencing data.
Bioinformatics. 2009 November 1; 25(21): 2839–2840.

Simplifier 0.4 – Eliminate Redundant NGS Contigs

Simplifier 0.4

:: DESCRIPTION

Simplifier is a stand-alone software that selectively eliminates redundant sequences from the collection of contigs generated by ab initio assembly of genomes.

::DEVELOPER

Prof. Rommel Ramos

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Java

:: DOWNLOAD

 Simplifier

:: MORE INFORMATION

Citation

Bioinformation. 2012;8(20):996-9. doi: 10.6026/97320630008996. Epub 2012 Oct 13.
Simplifier: a web tool to eliminate redundant NGS contigs.
Ramos RT, Carneiro AR, Azevedo V, Schneider MP, Barh D, Silva A.

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