Myrna 1.2.3
:: DESCRIPTION
Myrna is a cloud computing tool for calculating differential gene expression in large RNA-seq datasets. Myrna uses Bowtie for short read alignment and R/Bioconductor for interval calculations, normalization, and statistical testing. These tools are combined in an automatic, parallel pipeline that runs in the cloud (Elastic MapReduce in this case) on a local Hadoop cluster, or on a single computer, exploiting multiple computers and CPUs wherever possible.
::DEVELOPER
Ben Langmead, Kasper Hansen, and Jeffrey Leek
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Windows / MacOsX / Linux
- R package
- Bowtie
:: DOWNLOAD
:: MORE INFORMATION
Citation
Genome Biol. 2010;11(8):R83. doi: 10.1186/gb-2010-11-8-r83. Epub 2010 Aug 11.
Cloud-scale RNA-sequencing differential expression analysis with Myrna.
Langmead B, Hansen KD, Leek JT.