MIDAS – MIning Differentially Activated Subpaths of KEGG pathways from multi-class RNA-seq data

MIDAS

:: DESCRIPTION

MIDAS is an algorithm that determines condition specific subpaths, each of which has different activities across multiple phenotypes. MIDAS utilizes gene expression quantity information fully and the network centrality information to determine condition specific subpaths.

::DEVELOPER

Bio & Health Informatics Lab , Seoul National University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux
Python
R

:: DOWNLOAD

MIDAS

:: MORE INFORMATION

Citation

Lee S, Park Y, Kim S.
MIDAS: Mining differentially activated subpaths of KEGG pathways from multi-class RNA-seq data.
Methods. 2017 Jul 15;124:13-24. doi: 10.1016/j.ymeth.2017.05.026. Epub 2017 Jun 1. PMID: 28579402.

MIDAS 1.1 – A Database-Searching Algorithm for Metabolite Identification in Metabolomics

MIDAS 1.1

:: DESCRIPTION

MIDAS (Metabolite Identification via Database Searching) is a database searching approach which can be used for metabolite identification in metabolomics by matching measured tandem mass spectra (MS/MS) against the predicted fragments of metabolites in a database.

::DEVELOPER

the Pan lab

:: SCREENSHOTS

N/a

:: REQUIREMENTS

Windows / Mac OsX / Linux
Python

:: DOWNLOAD

MIDAS

:: MORE INFORMATION

Citation

Anal Chem. 2014 Sep 11.
MIDAS: A Database-Searching Algorithm for Metabolite Identification in Metabolomics.
Wang Y1, Kora G, Bowen BP, Pan C.

MIDAS 1.0 – Analysis and Visualisation of Interallelic Disequilibrium between Multiallelic Markers

MIDAS 1.0

:: DESCRIPTION

MIDAS (Multiallelic Interallelic Disequilibrium Analysis Software) is a linkage disequilibrium analysis program with a comprehensive graphical user interface providing novel views of patterns of linkage disequilibrium between all types of multiallelic and biallelic markers.

::DEVELOPER

Tom Gaunt’s group in the MRC IEU

:: SCREENSHOTS

:: REQUIREMENTS

Linux /Mac OsX / Windows
Python

:: DOWNLOAD

MIDAS

:: MORE INFORMATION

Citation:

Tom R Gaunt, Santiago Rodriguez, Carlos Zapata, Ian NM Day
MIDAS: software for analysis and visualisation of interallelic disequilibrium between multiallelic markers.
BMC Bioinformatics 2006, 7:227 (27 April 2006)

MIDAs – Molecular Isotopic Distribution Analysis

MIDAs

:: DESCRIPTION

MIDAs is a software designed to compute the theoretical isotopic distribution for molecules of known elemental composition. MIDAs computes for a molecule simultaneously two isotopic distributions: the coarse-grained isotopic distribution and the fine-grained isotopic distribution.

::DEVELOPER

Yi-Kuo Yu

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux
C++ Compiler

:: DOWNLOAD

MIDAs

:: MORE INFORMATION

Citation:

J Am Soc Mass Spectrom. 2014 Jan;25(1):57-70. doi: 10.1007/s13361-013-0733-7. Epub 2013 Nov 20.
Molecular Isotopic Distribution Analysis (MIDAs) with adjustable mass accuracy.
Alves G1, Ogurtsov AY, Yu YK.