Prometheus 0.8.0 – Storage, Management, and Analysis of Fermentation data

Prometheus 0.8.0

:: DESCRIPTION

Prometheus is a versatile software platform for the storage, management, and analysis of fermentation data. The multi application system allows storing of arbitrary online and offline parameters and supports gene expression studies by including existing applications for microarray and qPCR analysis. The newly developed application Prometheus features data import, runtime chart generation, data statistics, and a versatile data export mechanism. The platform can be accessed using a web browser and exposes many functions as a web service. The complete system is protected by a user management system providing single sign on and fine grained data sharing mechanisms.

::DEVELOPER

Genomics & Bioinformatics Graz, Graz University of Technology

:: SCREENSHOTS

:: REQUIREMENTS

Linux / Windows / MacOsX
Java
Oracle / PostgreSQL / MySQL

:: DOWNLOAD

Prometheus

:: MORE INFORMATION

Citation

Rader R, Pabinger S, Specht T, Ramsauer T, Trajanoski Z.
Prometheus: Integrating bioprocess and gene expression data for industrial bioprocess optimization.
submitted

XplorSeq 2.0.7 – Management of Nucleic Acid Sequences for Phylogenetic Analysis

XplorSeq 2.0.7

:: DESCRIPTION

XplorSeq facilitates the management of nucleic acid sequences for phylogenetic analysis.

::DEVELOPER

Daniel N. Frank, Ph.D

:: SCREENSHOTS

:: REQUIREMENTS

MacOsX

:: DOWNLOAD

XplorSeq

:: MORE INFORMATION

Citation:

Frank DN (2008)
XplorSeq: a software environment for integrated management and phylogenetic analysis of metagenomic sequence data.
BMC Bioinformatics 9: 420.

PEDSYS 2.0 – Database System for Management of Genetic, Pedigree and Demographic data

PEDSYS 2.0

:: DESCRIPTION

PEDSYS is a database system developed as a specialized tool for management of genetic, pedigree and demographic data. It has been designed principally for use with pedigree analysis of either human or non-human subjects. The system supports integrated collection, management and analysis of constantly evolving data sets by investigators in several different laboratories. Although some of the programs are specialized, many are general enough to be used effectively with data of any sort.

::DEVELOPER

Texas Biomed’s Department of Genetics

:: SCREENSHOTS

:: REQUIREMENTS

Linux/Windows/MacOsX

:: DOWNLOAD

PEDSYS

:: MORE INFORMATION

MAGNOLIA 1.2 – Microarray Data Management & Export System for PFGRC Microarrays

MAGNOLIA 1.2

:: DESCRIPTION

Magnolia is a microarray data management and export system for researchers who use PFGRC microarrays. Since it has been an obligation to submit microarray experiment data to public repositories for publishing the experimental results, collecting and storing the data is an essential step in microarray study. Implemented with H2 DBMS as the backend storage, Magnolia provides PFGRC array users with a series of intelligent entry form to collect the information or parameters of experiment, bio-source, sample, probe, slide, scan, expression, and normalization, which is MIAME compliant.

::DEVELOPER

J. Craig Venter Institute

:: SCREENSHOTS

:: REQUIREMENTS

Linux / Windows / Mac OsX
JAVA

:: DOWNLOAD

MAGNOLIA

:: MORE INFORMATION

This application is released under the GPL v3 License: View License

Contact the PFGRC’s Magnolia Development Team by email: magnolia@jcvi.org