SLIMS 1.0.0 – Sample-based Laboratory Information Management System

SLIMS 1.0.0

:: DESCRIPTION

SLIMS is a powerful and user-friendly open source web application that provides all members of a laboratory with an interface to view, edit, and create sample information. SLIMS aims to simplify common laboratory tasks with tools such as a user-friendly shopping cart for subjects, samples and containers that easily generates reports, shareable lists, and plate designs for genotyping.

::DEVELOPER

Genapha

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux
Apache
MySQL

:: DOWNLOAD

SLIMS

:: MORE INFORMATION

Citation:

Bioinformatics. 2010 Jul 15;26(14):1808-10. doi: 10.1093/bioinformatics/btq271. Epub 2010 May 30.
SLIMS–a user-friendly sample operations and inventory management system for genotyping labs.
Van Rossum T1, Tripp B, Daley D.

MACSIMS 1.42 – Multiple Alignment of Complete Sequences Information Management System

MACSIMS 1.42

:: DESCRIPTION

MACSIMS (Multiple Alignment of Complete Sequences Information Management System) is a multiple alignment-based information management system that combines the advantages of both knowledge-based and ab initio sequence analysis methods. Structural and functional information is mined automatically from the public databases. In the MACS, homologous regions are identified and the mined data is evaluated and propagated from known to unknown sequences with these reliable regions. MACSIMS provides a unique environment that facilitates knowledge extraction and the presentation of the most pertinent information to the biologist.

::DEVELOPER

Julie Dawn Thompson

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux
Java

:: DOWNLOAD

MACSIMS

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2006 Jun 23;7:318.
MACSIMS: multiple alignment of complete sequences information management system.
Thompson JD, Muller A, Waterhouse A, Procter J, Barton GJ, Plewniak F, Poch O.

ms-lims 7.7.7 – Mass Spectrometry based Proteomics Information Management System

ms-lims 7.7.7

:: DESCRIPTION

The ms_lims project provides a lightweight, portable yet production-grade solution for managing mass spectrometry based proteomics data.

::DEVELOPER

Computational Omics and Systems Biology Group

:: SCREENSHOTS

:: REQUIREMENTS

Windows / Linux / MacOsX
Java

:: DOWNLOAD

ms-lims

:: MORE INFORMATION

Citation

Proteomics. 2010 Mar;10(6):1261-4.
ms_lims, a simple yet powerful open source laboratory information management system for MS-driven proteomics.
Helsens K, Colaert N, Barsnes H, Muth T, Flikka K, Staes A, Timmerman E, Wortelkamp S, Sickmann A, Vandekerckhove J, Gevaert K, Martens L.

PWIMS 2.3 – Proteomics Workflow and Information Management System

PWIMS 2.3

:: DESCRIPTION

PWIMS is an information management system designed as client-server tool for handling Proteomics Experiments. It has features for 2DGe image capturing, Protocol Management, Mass spec data integration, sample management etc.

::DEVELOPER

Bioinformatics Group, Roskamp Institute

:: SCREENSHOTS

N/A

:: REQUIREMENTS

LAMPP (Linux-Apache-MySQL-Perl/PHP) environment

:: DOWNLOAD

PWIMS

:: MORE INFORMATION

Citation

Venkatarajan Mathura, Deepak Kolippakkam, Sarah Wilson, Freya Geall, Hong Wang, Fiona Crawford, Michael Mullan., 2004
“PWIMS 1.0: Proteomics Workflow and Information Management System”,
Society of Neuroscience, 34th Annual Meeting.