:: DESCRIPTION
Faucet is an streaming metagenome assembler. It uses low memory and disk space and achieves highly contiguous assemblies.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2018 Jan 1;34(1):147-154. doi: 10.1093/bioinformatics/btx471.
Faucet: streaming de novo assembly graph construction.
Rozov R, Goldshlager G, Halperin E, Shamir R.
:: DESCRIPTION
Graphite is a variant adjudication tool that aids in confirming or rejecting the presence of candidate alleles by constructing a graph using reference as well as alternate alleles.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
GraphDTL is the first method to infer supports for evolutionary events based on their frequencies in the set of equally parsimonious reconciliations
Given a , this program computes
::DEVELOPER
The Computational Biology Institute (IBC)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
J Bioinform Comput Biol. 2013 Apr;11(2):1250025. doi: 10.1142/S0219720012500254. Epub 2012 Dec 28.
Representing a set of reconciliations in a compact way.
Scornavacca C1, Paprotny W, Berry V, Ranwez V.
:: DESCRIPTION
GraphDNA (DNA Skew Graphing) allows the user to generate graphical representations of raw DNA sequences. To date, there are 8 graphing options and the user can plot any of the individal genes or genomes in any format
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Thomas, J.M., Horspool, D., Brown, G., Tcherepanov, V., and Upton, C. 2007.
GraphDNA: a Java program for graphical display of DNA composition analyses.
BMC Bioinformatics. 8:21.
:: DESCRIPTION
DigitizeIt digitizer software replaces a digitizer tablet. Sometimes it is necessary to extract data values from graphs, e.g. in most scientific publications only plots but no data values are published. DigitizeIt makes it easy to actually get back numbers from such a plot! This is a three step process: a) import the graph from a file or copy it over the clipboard, b) define the axes system, c) digitize it automatically or manually. Data values can then be saved in ASCII format or copy & pasted directly into any other application, e.g. MS Excel or Microcal Origin.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
GetData Graph Digitizer is a program for digitizing graphs and plots. It is often necessary to obtain original (x,y) data from graphs, e.g. from scanned scientific plots, when data values are not available.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
ChromoSeg. A simulation program that simulates and plots (in real time) ancestral recombination graphs
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
Graph Digitizer intends for digitization of orthogonal graphs (from book, papers). The input graph image file should be in bmp, jpg, tif or gif format. Image of the graph can be scanned or pasted from clipboard. A bad image map can be edited and rotated. A tie to real coordinates of chart implements by allocation of rectangular area and coordinates setting of two points – left-bottom and righ-top corners of this rectangle. There are three modes of digitization. Auto digitization – you define curve color and area of search (the red rectangle) and press button “Auto digitization in rectangle area”. Semi-auto digitization – when you press button “Search in area” and move cursor on (along) a curve. Manual digitization – you press button “Manual input” and click in curve, the value is recorded in the table. Data Y(X) from the Table may be displaed in Grapher or saved in data-file format.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
At the expiration of the period of 30 days this application will be terminated. Registered version doesn’t have a time limitations.
:: DESCRIPTION
g3data is used for extracting data from graphs. In publications graphs often are included, but the actual data is missing. g3data makes the extracting process much easier.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
g3data is distributed under the GNU General Public License (GPL), as described in the ‘COPYING’ file.
:: DESCRIPTION
MAGE-ML visualize script will read any MAGE-ML file and generate a graph showing the links between BioMaterials all the way through to BioAssays, and include information on sample characteristics and experimental factor values in the output.
::DEVELOPER
Anna Farne at the EBI
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
N/A
