IBDSim 2.0 – Simulation of Genotypic data under general Isolation by Distance models

IBDSim 2.0

:: DESCRIPTION

IBDSim is a computer package for the simulation of genotypic data under general isolation by distance models.

::DEVELOPER

Raphael Leblois

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Linux/Windows

:: DOWNLOAD

 IBDSim

:: MORE INFORMATION

Citation

Mol Ecol Resour. 2009 Jan;9(1):107-9. doi: 10.1111/j.1755-0998.2008.02417.x. Epub 2008 Nov 10.
IBDSim: a computer program to simulate genotypic data under isolation by distance.
Leblois R, Estoup A, Rousset F.

AFLPdat 20100624 – Handling of Dominant Genotypic data

AFLPdat 20100624

:: DESCRIPTION

AFLPdat is a collection of R functions which facilitates the handling of dominant genotypic data. It converts data from a standard tab separated table to the input formats of the following programs: Arlequin, Structure, Treecon, PAUP and Hickory.

::DEVELOPER

Ehrich, Dorothee

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 AFLPdat

:: MORE INFORMATION

Citation:

Ehrich D (2006)
AFLPdat: a collection of R functions for convenient handling of AFLP data.
Molecular Ecology Notes 6: 603-604.

HapMap filter 1.0 – Preprocess the HapMap Genotypic data for Association Studies

HapMap filter 1.0

:: DESCRIPTION

HapMap filter is a tool to preprocess the HapMap genotypic data for association studies.

::DEVELOPER

Dr. Wei Zhang, wzhang1@uchicago.edu

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / Mac OsX
  • C++ Compiler

:: DOWNLOAD

 HapMap filter

:: MORE INFORMATION

Citation

HapMap filter 1.0: a tool to preprocess the HapMap genotypic data for association studies.
Zhang W, Duan S, Dolan ME.
Bioinformation. 2008 May 13;2(8):322-4.

GenoQuickSim 20100309 – Simulates Genotypic data using Coalescent Methods

GenoQuickSim 20100309

:: DESCRIPTION

GenoQuickSim is a software for conveniently simulating genotypic data for simple poulation structures

::DEVELOPER

Steven Kalinowski, Ph.D.

:: SCREENSHOTS

::REQUIREMENTS

:: DOWNLOAD

 GenoQuickSim

:: MORE INFORMATION

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