Fastbreak – Structural Variant Detection in Genomic data

Fastbreak

:: DESCRIPTION

Fastbreak is a set of python scripts implementing an O(n) algorithm for detecting translocations and other genetic structural variants from aligned mate pair sequence data in SAM/BAM format.

::DEVELOPER

Shmulevich Group

:: SCREENSHOTS

:: REQUIREMENTS

Web Server
Tomcat
Java

:: DOWNLOAD

Fastbreak

:: MORE INFORMATION

Citation

EURASIP J Bioinform Syst Biol. 2012 Oct 9;2012(1):15. doi: 10.1186/1687-4153-2012-15.
Fastbreak: a tool for analysis and visualization of structural variations in genomic data.
Bressler R, Lin J, Eakin A, Robinson T, Kreisberg R, Rovira H, Knijnenburg T, Boyle J, Shmulevich I.

MetaPCA 0.1.4 – Meta-analysis in the Dimension Reduction of Genomic data

MetaPCA 0.1.4

:: DESCRIPTION

MetaPCA is a software of dimension reductioin by PCA, sparse PCA and robust PCA in meta-analysis. The software implements simultaneous dimension reduction using PCA when multiple studies are combined.

::DEVELOPER

George C. Tseng

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows/Linux/MacOsx
R Package

:: DOWNLOAD

MetaPCA

:: MORE INFORMATION

Genomica 3.040710 – Analysis and Visualization Tool for Genomic data

Genomica 3.040710

:: DESCRIPTION

Genomica is an analysis and visualization tool for genomic data, which can integrate gene expression data, DNA sequence data, and gene and experiment annotation information.

::DEVELOPER

Segal Lab

:: SCREENSHOTS

:: REQUIREMENTS

Linux/ Windows/MacOsX

:: DOWNLOAD

Genomica

:: MORE INFORMATION