:: DESCRIPTION
Insignia is comprehensive system for finding unique DNA sequences that can be used to identify any bacterial or virus species or strain.
::DEVELOPER
the Center for Bioinformatics and Computational Biology
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Phillippy AM, Ayanbule K, Edwards NJ, Salzberg SL.
Insignia: a DNA signature search web server for diagnostic assay development.
Nucleic Acids Res. 2009
:: DESCRIPTION
PPFINDER is a Perl-based procedure for finding processed pseudogenes in genome annotations (GTF format). PPFINDER identifies pseudogenes using two different methods, and creates a GTF file with pseudogene coordinates that can be used for masking the genome sequence. In gene prediction mode, PPFINDER will mask out the genomic sequence and rerun gene prediction. Rounds of pseudogene masking and gene prediction are iterated until convergence.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
