GBSX 1.3 – Experimental Design and Demultiplexing Genotyping by Sequencing Experiments

GBSX 1.3

:: DESCRIPTION

GBSX is a package of tools to first aid in experimental design, including choice of enzymes and barcode design. Secondly, it provides a first analysis step to demultiplex samples using in-line barcodes, providing fastq files that can easily be plugged into existing variant analysis pipelines.

::DEVELOPER

GBSX team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows/Linux/MacOsX
Perl
Java

GBSX

:: MORE INFORMATION

Citation

GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments.
Herten K, Hestand MS, Vermeesch JR, Van Houdt JK.
BMC Bioinformatics. 2015 Mar 6;16(1):73.

MEED – Model Expansion Experimental Design

MEED

:: DESCRIPTION

MEED is a tool for practical microarray experimental design that can suggest experiments so as to avoid ambiguity in the identification of regulatory relatrionships.

::DEVELOPER

Irit Gat-Viks laboratory.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

WIndows/Linux
R
C++

:: DOWNLOAD

MEED

:: MORE INFORMATION

Citation:

Szczurek E, Gat-Viks I, Tiuryn J, Vingron M:
Elucidating regulatory mechanisms downstream of a signaling pathway using informative experiments.
Mol Syst Biol 2009, 5:287.

R/qtlDesign 0.91 – Software for QTL Experimental Design

R/qtlDesign 0.91

:: DESCRIPTION

R/qtlDesign is software to help plan quantitative trait locus (QTL) experiments.

::DEVELOPER

saunak sen

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows / Linux / MacOSX
R Package

:: DOWNLOAD

R/qtlDesign

:: MORE INFORMATION

Citation

Mamm Genome. 2007 Feb;18(2):87-93. Epub 2007 Mar 8.
R/qtlDesign: inbred line cross experimental design.
Sen S, Satagopan JM, Broman KW, Churchill GA.