Tag: Demultiplexing

TagGD – DNA Tag Generation and Demultiplexing

TagGD

:: DESCRIPTION

TagGD (DNA-based Tag Generator and Demultiplexor), a fully-customisable, fast and accurate software package that can generate thousands of barcodes satisfying user-defined constraints and can guarantee full demultiplexing accuracy.

::DEVELOPER

the Science for Life Laboratory, Uppsala University,

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/MacOsX/Windows

:: DOWNLOAD

  TagGD

:: MORE INFORMATION

Citation

PLoS One. 2013;8(3):e57521. doi: 10.1371/journal.pone.0057521. Epub 2013 Mar 4.
TagGD: fast and accurate software for DNA Tag generation and demultiplexing.
Costea PI, Lundeberg J, Akan P.

deML v1.1.3 – Maximum Likelihood Demultiplexing for NGS data

deML v1.1.3

:: DESCRIPTION

deML is a program for maximum likelihood demultiplexing of next-generation sequencing data.

::DEVELOPER

Department of Genetics / Bioinformatics Group, Max Planck Institute for Evolutionary Anthropology, Leipzig

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C++ compiler

:: DOWNLOAD

 deML

:: MORE INFORMATION

Citation

deML: Robust demultiplexing of Illumina sequences using a likelihood-based approach.
Renaud G, Stenzel U, Maricic T, Wiebe V, Kelso J.
Bioinformatics. 2014 Oct 30. pii: btu719.

GBSX 1.3 – Experimental Design and Demultiplexing Genotyping by Sequencing Experiments

GBSX 1.3

:: DESCRIPTION

GBSX is a package of tools to first aid in experimental design, including choice of enzymes and barcode design. Secondly, it provides a first analysis step to demultiplex samples using in-line barcodes, providing fastq files that can easily be plugged into existing variant analysis pipelines.

::DEVELOPER

GBSX team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Perl
  • Java

 GBSX

:: MORE INFORMATION

Citation

GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments.
Herten K, Hestand MS, Vermeesch JR, Van Houdt JK.
BMC Bioinformatics. 2015 Mar 6;16(1):73.

Bayexer – Demultiplexing Tool for Illumina sequencers

Bayexer

:: DESCRIPTION

Bayexer (Bayesian demultiplexing) is a fast and accurate tool for demultiplexing reads generated by Illumina sequencers.

::DEVELOPER

Haisi Yi

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl
:: DOWNLOAD

 Bayexer

:: MORE INFORMATION

Citation:

Bayexer: an accurate and fast Bayesian Demultiplexer for Illumina sequences.
Yi H, Li Z, Li T, Zhao J.
Bioinformatics. 2015 Aug 26. pii: btv501.

sabre – A Barcode Demultiplexing and Trimming tool for FastQ files

sabre

:: DESCRIPTION

Sabre is a tool that will demultiplex barcoded reads into separate files. It will work on both single-end and paired-end data in fastq format. It simply compares the provided barcodes with each read and separates the read into its appropriate barcode file, after stripping the barcode from the read (and also stripping the quality values of the barcode bases). If a read does not have a recognized barcode, then it is put into the unknown file.

::DEVELOPER

UC Davis Bioinformatics Core

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

Sabre

:: MORE INFORMATION

Reaper 17-257 – Demultiplexing, Trimming and Filtering Short Read Sequencing data

Reaper 17-257

:: DESCRIPTION

Reaper is a program for demultiplexing, trimming and filtering short read sequencing data. It is intended to be suitable for dealing with a wide range of sequencing protocols, and will be updated to support new protocols where the current set of features does not suffice

::DEVELOPER

Stijn van Dongen

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / MacOsX /  Linux
  • C Compiler

:: DOWNLOAD

 Reaper

:: MORE INFORMATION

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