PEDconvert
:: DESCRIPTION
PEDconvert tool converts PLINK PED files into Multiple Genes File Format.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
:: DOWNLOAD
:: MORE INFORMATION
Tag: Convert
g2h.pl / h2g.pl / h2h.pl – Convert Genotypes/Haplotypes File
g2h.pl / h2g.pl / h2h.pl
:: DESCRIPTION
g2h.pl is a software to convert genotypes (in .ped format) to haplotypes
h2g.pl is a software to convert haplotypes to genotypes (in .ped format)
h2h.pl is a software to extract haplotypes for a subset of markers
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux / Windows / MacOsX
- Perl
:: DOWNLOAD
:: MORE INFORMATION
Treecon-Tools 0.1 – Convert Phylogenetic Trees File Formate
Treecon-Tools 0.1
:: DESCRIPTION
Treecon-Toolscontains 3 small programs to convert phylogenetic trees between NH, NHX and Treecon formats.
:: DEVELOPER
Bioinformatics & Systems Biology
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux/Windows/MacOsX
- TCL/TK
:: DOWNLOAD
:: MORE INFORMATION
cif2pdb 2.0.3 – Convert mmCIF to Pseudo-PDB Format
cif2pdb 2.0.3
:: DESCRIPTION
cif2pdb converts mmCIF files to a PDB or WPDB .
::DEVELOPER
Herbert J. Bernstein and Frances C. Bernstein
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
- CIFtbx
:: DOWNLOAD
:: MORE INFORMATION
ZeissToSGI 1.1 – Convert Zeiss AxioVision TIFF files to files that can be read by SoftWoRx
ZeissToSGI 1.1
:: DESCRIPTION
ZeissToSGI utility program converts from a Zeiss AxioVision TIFF file to one that can be read by the SoftWoRx software on SGI boxes.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
- Windows
:: DOWNLOAD
:: MORE INFORMATION
abi2xml 1.2 – Convert Abi Trace File to Xml File
abi2xml 1.2
:: DESCRIPTION
abi2xml is a command line utility to convert an abi trace file to an xml file. Abi trace files contain DNA sequence data and are e.g. produced by ABI PRISM TM 377 DNA sequencers.
::DEVELOPER
Erik Sjölund (erik.sjolund <at> gmail.com)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Windows / Mac OsX / Linux
- qt
:: DOWNLOAD
:: MORE INFORMATION
LDATAPP 2.0 – Convert FCS data to ASCII text
LDATAPP 2.0
:: DESCRIPTION
LDATAPP dumps FCS listmode or histogram data into ASCII text files. It has a simple interface to select input files and output paths. It requires a 32 bit Microsoft Windows operating system.
::DEVELOPER
Purdue University Cytometry Laboratories
:: SCREENSHOTS
:: REQUIREMENTS
- Windows
:: DOWNLOAD
:: MORE INFORMATION
For more information contact:
J. Paul Robinson, Ph.D., Director PUCL, Hansen Hall, B050, Purdue University, West Lafayette, IN 47907, USA Phone: (765)494-0757, Email tojpr@flowcyt.cyto.purdue.edu
ProteinMusic 1.1 – Convert DNA Sequences into Music
ProteinMusic 1.1
:: DESCRIPTION
ProteinMusic is a Java program converting DNA sequences into music.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
- Windows / Linux / Mac OsX
- Java
:: DOWNLOAD
:: MORE INFORMATION
Citation:
King, R.D. & Angus, C.G. (1996)
PM: Protein Music.
CABIOS. 12, pages 251-252
KEGG2SBML 1.5.0 – Convert KEGG Pathway Database to SBML
KEGG2SBML 1.5.0
:: DESCRIPTION
KEGG2SBML can convert KEGG (Kyoto Encyclopedia of Genes and Genomes) Pathway database files to SBML using the KEGG LIGAND database. KEGG2SBML’s capabilities are currently limited to converting only KEGG Metabolic Pathway files and not other types of KEGG files.
::DEVELOPER
Akiya Jouraku, Nobuyuki Ohta and Akira Funahashi , Dept. of Biosciences and Informatics at Keio University
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Windows / Linux / Mac OsX
- Perl
- KEGG Pathway database
- LIGAND database
:: DOWNLOAD
:: MORE INFORMATION
Citations
- Converting KEGG pathway database to SBML, Funahashi, A., Jouraku, A., and Kitano, H.
8th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2004). - Converting the KEGG pathway database to SBML, Funahashi, A., Jouraku, A., and Kitano, H.
5th International Conference on Systems Biology (ICSB 2004), October, 2004.
Remediator 1.60 – Convert PDB Files between PDBv2.3 & PDBv3.2 Formats
Remediator 1.60
:: DESCRIPTION
Remediator converts PDB files between PDBv2.3 and PDBv3.2 formats. It can accurately and rapidly convert in either direction: old to new OR new to old. Atom records of type ATOM, HETATM, TER, ANISOU, SIGATM, SIGUIJ, and LINK are converted, as are DNA residue names (e.g., A, C, T, G of v2.3 cf. DA, DC, DT, DG of v3.2). Remediator is available as a Perl or Python script. The scripts should work on any type of computing platform, as long as your operating system has the appropriate framework.
::DEVELOPER
:: SCREENSHOTS
Command Line
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Remediator uses the remediated Chemical Component Dictionary as its “rosetta stone” for conversion.
Remediator is free software available under the terms of its own BSD-style license.