:: DESCRIPTION
KaPPA-Average organizes such a multiple to multiple relationships between probe IDs and gene IDs, and processes probe ID-based gene expression data to convert to gene ID-based data. When a gene is detectable by several probes, the expression value of the gene is calculated as the average of the probe values.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
AmberFFC creates the AMBER & GLYCAM FF for the Accelrys molecular mechanics modules, FDiscover and CDiscover by transforming the AMBER/GLYCAM topology database and FF parameter files to the Accelrys file format. Thus, the program is useful for any modeler who is interested in (i) using the AMBER & GLYCAM FF with the Accelrys software and (ii) comparing the results obtained with the AMBER and Accelrys modeling packages.
::DEVELOPER
A. Dejoux, P. Cieplak, N. Hannick, G. Moyna, & F.-Y. Dupradeau,
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
A. Dejoux, P. Cieplak, N. Hannick, G. Moyna, & F.-Y. Dupradeau,
AmberFFC, A Flexible Program to Convert AMBER and GLYCAM Force Fields for use with Commercial Molecular Modeling Packages,
J. Mol. Model., 2001, 7, 422-432,
:: DESCRIPTION
Janus is a freeware stand-alone program that converts CSV and tab-delimited files to Nexus data files.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
SAM2Pretty converts a SAM entry to a human readable and more verbose format.
::DEVELOPER
:: SCREENSHOTS
N/A
::REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
iConvert.pl: Perl script converting tree files and sequence files between common formats . This program supports FASTA, PIR, Clustal and Nexus sequence files and Phylip, Nexus, Clustal tree files.
::DEVELOPER
SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
CELUTIL makes available to end user, automated scripts, CGI scripts and other programs the capabilities to read, convert, compress, compare and query raw files (*.CEL) in both XDA (GCOS compatible) and ASCII (MAS 5 compatible) format.
::DEVELOPER
Paladini, David ; Deschênes, Astrid ; Rigault, Philippe.
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
PDBQT converter can help you convert a batch of .pdb or .mol2 or a mix of these files to .pdbqt files.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
fasta2pfam.pl converts a fasta file to pfam format for use with quickdist
::DEVELOPER
Susan Huse, shuse@mbl.edu
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
