:: DESCRIPTION
SamQL is a structured query language and filtering tool for the SAM/BAM file format.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Lee CT, Maragkakis M.
SamQL: a structured query language and filtering tool for the SAM/BAM file format.
BMC Bioinformatics. 2021 Oct 2;22(1):474. doi: 10.1186/s12859-021-04390-3. PMID: 34600480; PMCID: PMC8487582.
:: DESCRIPTION
samcomp is a simple arithmetic coding based compressor for the SAM and BAM (DNA sequence alignment) file format.
::DEVELOPER
James K. Bonfield (jkb@sanger.ac.uk), Matt Mahoney
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bonfield JK, Mahoney MV (2013)
Compression of FASTQ and SAM Format Sequencing Data.
PLoS ONE 8(3): e59190. doi:10.1371/journal.pone.0059190
:: DESCRIPTION
PyMsXML is a python script for converting vendor specific mass spectrometry data files for Applied Biosystems’ Q-Star, 4700, 4800, Mariner, and Voyager mass spectrometers from their raw binary form, to either of the emerging XML file formats for mass spectra: mzXML, from the Sashimi Glossolalia project of the Institute for Systems Biology (ISB); and mzData, from the Proteome Standardization Initiative (PSI) project of the Human Proteome Organization (HUPO).
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
ALTER (ALignment Transformation EnviRonment) is a web-based tool to transform between multiple sequence alignment formats. ALTER focuses on the specifications of mainstream alignment and analysis programs rather than on the conversion among more or less specific formats.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Glez-Peña D; D. Gómez-Blanco; M. Reboiro-Jato; F. Fdez-Riverola; D. Posada (2010)
ALTER: program-oriented format conversion of DNA and protein alignments.
Nucleic Acids Research. (2010) 38 (suppl 2): W14-W18.doi: 10.1093/nar/gkq321
:: DESCRIPTION
AgileFileConverter converts varaint data in tab delimited text files, typically supplied by commercial NGS service providers, into the format used by AgileGeneFilter, AgileVariantViewer and AgileFileViewer
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
JPhyloIO is an open source Java library for reading and writing phylogenetic file formats. The main aim is to provide access to various formats using a single interface, while being independent of the concrete application data model, to achieve maximal flexibility.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Bioinformatics. 2019 Jul 22;20(1):402. doi: 10.1186/s12859-019-2982-3.
JPhyloIO: a Java library for event-based reading and writing of different phylogenetic file formats through a common interface.
Stöver BC, Wiechers S, Müller KF.
:: DESCRIPTION
lav2axt is a software to convert LAV file format to AXT file format.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
PEDconvert tool converts PLINK PED files into Multiple Genes File Format.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
