:: DESCRIPTION
ClanTox is a classifier of animal toxins. Given a sequence, it predicts whether the sequence is a toxin or toxin-like protein.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2010 Sep 15;26(18):i482-8. doi: 10.1093/bioinformatics/btq375.
A predictor for toxin-like proteins exposes cell modulator candidates within viral genomes.
Naamati G1, Askenazi M, Linial M.
:: DESCRIPTION
PiType is an accurate 3D structure-independent computational method for classifying protein interactions into simultaneously possible (SP) and mutually exclusive (ME) as well as into obligate and non-obligate.
::DEVELOPER
:: SCREENSHOTS
N/a
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Syst Biol. 2013;7 Suppl 6:S5. doi: 10.1186/1752-0509-7-S6-S5. Epub 2013 Dec 13.
Prediction of protein interaction types based on sequence and network features.
Goebels F, Frishman D.
:: DESCRIPTION
CATCh is an ensemble classifier for chimera detection in 16S rRNA sequencing studies
::DEVELOPER
The Bioinformatics team of the Microbiology Unit, SCK.CEN
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Appl Environ Microbiol. 2015 Mar;81(5):1573-84. doi: 10.1128/AEM.02896-14. Epub 2014 Dec 19.
CATCh, an ensemble classifier for chimera detection in 16S rRNA sequencing studies.
Mysara M, Saeys Y, Leys N, Raes J, Monsieurs P
:: DESCRIPTION
EPPIC aims at classifying the interfaces present in protein crystal structures in order to determine whether they are biologically relevant or not.
::DEVELOPER
:: SCREENSHOTS
N/a
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Protein interface classification by evolutionary analysis.
Duarte JM, Srebniak A, Schärer MA, Capitani G.
BMC Bioinformatics. 2012 Dec 22;13:334. doi: 10.1186/1471-2105-13-334.
:: DESCRIPTION
The regshape R package provides a classifier for predicting whether a given oligonucleotide sequence (of length l bp, where l would typically vary from six to as high as 25 bp) is, or is not, a transcription factor (TF) binding site.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2015 Jun 30. pii: btv391
A DNA shape-based regulatory score improves position-weight matrix-based recognition of transcription factor binding sites.
Yang J, Ramsey SA.
:: DESCRIPTION
iTAK is a program to identify plant transcription factors (TFs), transcriptional regulators (TRs) and protein kinases (PKs) from protein or nucleotide sequences and then classify individual TFs, TRs and PKs into different gene families. Identification and classification of TFs and TRs are based on the rules (required and forbidden protein domains of each gene family) described in Perez-Rodriguez et al (2010).
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
The RDP Classifier is a naive Bayesian classifier that can rapidly and accurately provides taxonomic assignments from domain to genus, with confidence estimates for each assignment
::DEVELOPER
The Ribosomal Database Project
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy.
Wang Q, Garrity GM, Tiedje JM, Cole JR.
Appl Environ Microbiol. 2007 Aug;73(16):5261-7. Epub 2007 Jun 22.
:: DESCRIPTION
CAMUR is a new method and software package able to extract multiple, alternative, and equivalent classification models.
::DEVELOPER
DMB (Data Mining Big) Team
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
CAMUR: Knowledge extraction from RNA-seq cancer data through equivalent classification rules.
Cestarelli V, Fiscon G, Felici G, Bertolazzi P, Weitschek E.
Bioinformatics. 2015 Oct 30. pii: btv635.
:: DESCRIPTION
DDSClassifier is a new classification strategy that can take into consideration of both cell component changes and cell molecular stage changes.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Wang L, Oh WK, Zhu J.
Disease-specific classification using deconvoluted whole blood gene expression.
Sci Rep. 2016 Sep 6;6:32976. doi: 10.1038/srep32976. PMID: 27596246; PMCID: PMC5011717.
:: DESCRIPTION
Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples, with better sensitivity than and comparable accuracy to other leading systems.
::DEVELOPER
The Center for Computational Biology at Johns Hopkins University
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
