BRIG is a cross-platform application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data.
BLASTER is a simple and easy to use tool for BLAST and sequence extractions in a batch mode. Blaster supports local and online BLAST as well as extracting PubMed ID’s sequences from NCBI or a local FASTA file.
MultiGeneBlast is an open source tool for identification of homologs of multigene modules such as operons and gene clusters. It is based on a reformatting of the FASTA headers of NCBI GenBank protein entries, using which it can track down their source nucleotide and coordinates.
BDBM provides a graphical user interface that allows you to create high quality sequence datasets using the tools included. Using these tools you can perform several common tasks such as doing BLAST alignments, getting the open reading frames of the sequences in a Fasta file or changing the format of a Fasta file.
PLAN (Personal BLAST Navigator) is a versatile web platform that helps users to carry out various personalized pre- and post-BLAST tasks, including: (1) query and target sequence database management, (2) automated high-throughput BLAST searching, (3) indexing and searching of results, (4) filtering results online, (5) managing results of personal interest in favorite categories, (6) automated sequence annotation (such as NCBI NR and ontology-based annotation). PLAN integrates, by default, the Decypher hardware-based BLAST solution provided by Active Motif Inc. with a greatly improved efficiency over conventional BLAST software. BLAST results are visualized by spreadsheets and graphs and are full-text searchable. BLAST results and sequence annotations can be exported, in part or in full, in various formats including Microsoft Excel and FASTA. Sequences and BLAST results are organized in projects, the data publication levels of which are controlled by the registered project owners. In addition, all analytical functions are provided to public users without registration.
BLASTO is a modified BLAST tool for searching orthologous group data. BLASTO treats each ortholog group as a unit, and instead of providing a ranked list of individual sequence hits, it organizes and ranks the BLAST results by ortholog groups, which is often a much more desirable format for functional inference or evolutionary studies.