:: DESCRIPTION
BEDASSLE estimates the relative contributions of pairwise geographic distance and pairwise ecological distance to patterns of genetic variation.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Evolution. 2013 Nov;67(11):3258-73. doi: 10.1111/evo.12193.
Disentangling the effects of geographic and ecological isolation on genetic differentiation.
Bradburd GS, Ralph PL, Coop GM.
:: DESCRIPTION
PurBayes is an MCMC-based algorithm that uses next-generation sequencing data to estimate tumor purity and clonality for paired tumor-normal data.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
Bioinformatics. 2013 Aug 1;29(15):1888-9. doi: 10.1093/bioinformatics/btt293. Epub 2013 Jun 6.
PurBayes: estimating tumor cellularity and subclonality in next-generation sequencing data.
Larson NB1, Fridley BL.
:: DESCRIPTION
bgc implements Bayesian estimation of genomic clines to quantify introgression at many loci. Models are available for linked loci, genotype uncertainty and sequence errors. Models for genotype uncertainty and sequence error can be used to estimate genomic cline parameters from next-generation sequence data.
::DEVELOPER
Buerkle lab ,University of Wyoming
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
bgc: Software for Bayesian estimation of genomic clines.
Gompert Z, Buerkle CA.
Molecular Ecology Resources, 2012 Nov;12(6):1168-76. doi: 10.1111/1755-0998.12009.x. Epub 2012 Sep 14.
:: DESCRIPTION
BASELINe, a new computational framework for Bayesian estimation of Antigen-driven selection in Immunoglobulin sequences, provides a more intuitive means of analyzing selection by actually quantifying it.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Nucleic Acids Res. 2012 Sep 1;40(17):e134. Epub 2012 May 27.
Quantifying selection in high-throughput Immunoglobulin sequencing data sets.
Yaari G1, Uduman M, Kleinstein SH.
:: DESCRIPTION
PyRate is a Python program to estimate speciation, extinction, and preservation rates from fossil occurrence data using a Bayesian framework.
::DEVELOPER
The Computational Phylogenetics group
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Silvestro, D., J. Schnitzler, L. H. Liow, A. Antonelli, and N. Salamin. 2014.
Bayesian estimation of speciation and extinction from incomplete fossil occurrence data.
Systematic Biology doi:10.1093/sysbio/syu006.
:: DESCRIPTION
BAYESFST , Bayesian estimation of the coancestry coefficient FST
::DEVELOPER
Department of Mathematics and Statistic , The University of Reading
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Beaumont, Balding (2004),
“Identifying adaptive genetic divergence among populations from genome scans“,
Molecular Ecology, 13:969-980.
