Tag: WHAM

Wham 1.8.0 – Identifying Structural Variants of Biological Consequence

Wham 1.8.0

:: DESCRIPTION

Wham (Whole-genome Alignment Metrics) is a structural variant (SV) caller that integrates several sources of mapping information to identify SVs.

::DEVELOPER

Zev Kronenberg, Shapiro Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 Wham

:: MORE INFORMATION

Citation:

Wham: Identifying Structural Variants of Biological Consequence.
Kronenberg ZN, Osborne EJ, Cone KR, Kennedy BJ, Domyan ET, Shapiro MD, Elde NC, Yandell M.
PLoS Comput Biol. 2015 Dec 1;11(12):e1004572. doi: 10.1371/journal.pcbi.1004572.

WHAM 0.1.5 – High-throughput Sequence Alignment

WHAM 0.1.5

:: DESCRIPTION

WHAM (WISCONSIN’S HIGH-THROUGHPUT ALIGNMENT METHOD) is a high-throughput sequence alignment tool developed at University of Wisconsin-Madison. It aligns short DNA sequences (reads) to the whole human genome at a rate of over 1500 million 60bps reads per hour, which is one to two orders of magnitudes faster than the leading state-of-the-art techniques.

::DEVELOPER

Jignesh M. Patel 

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 WHAM

:: MORE INFORMATION

Citation:

WHAM: A High-throughput Sequence Alignment Method,
Y. Li, A. Terrel and J. M. Patel,
SIGMOD 2011, Athens, Greece

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