ViQuaS 1.3
:: DESCRIPTION
ViQuaS is based on a novel reference-assisted de novo assembly algorithm for constructing local haplotypes. A significantly extended version of an existing global strain reconstruction algorithm is also used.
::DEVELOPER
Duleepa Jayasundara <d.jayasundara@student.unimelb.edu.au>
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
- R
- Perl
:: DOWNLOAD
:: MORE INFORMATION
Citation:
ViQuaS: An improved reconstruction pipeline for viral quasispecies spectra generated by next-generation sequencing.
Jayasundara D, Saeed I, Maheswararajah S, Chang BC, Tang SL, Halgamuge SK.
Bioinformatics. 2015 Mar 15;31(6):886-96. doi: 10.1093/bioinformatics/btu754