Cortex 1.05.21
:: DESCRIPTION
Cortex is an efficient and low-memory software framework for analysis of genomes using sequence data. There are two main executables, being developed in parallel streams: cortex_con (primary contact Mario Caccamo) is for consensus genome assembly, and cortex_var (primary contact Zamin Iqbal) is for variation and population assembly.
::DEVELOPER
:: SCREENSHOTS
N/a
:: REQUIREMENTS
- Linux
- C compiler
:: DOWNLOAD
:: MORE INFORMATION
Citation
Nat Genet. 2012 Jan 8;44(2):226-32. doi: 10.1038/ng.1028.
De novo assembly and genotyping of variants using colored de Bruijn graphs.
Iqbal Z, Caccamo M, Turner I, Flicek P, McVean G.