STARRInIGHTS – Strain-based Tree Analysis and Recombinant Region Inference In Genomes from High-Throughput Sequencing projects

STARRInIGHTS

:: DESCRIPTION

STARRInIGHTS is a computational pipeline for inferring homologous recombination breakpoints in populations of closely related bacterial genomes.

::DEVELOPER

The Alm lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / Mac OsX
  • Perl
  • Java

:: DOWNLOAD

 STARRInIGHTS

:: MORE INFORMATION

TARGeT 2.10 – Tree Analysis of Related Genes and Transposons

TARGeT 2.10

:: DESCRIPTION

TARGeT (Tree Analysis of Related Genes and Transposons) uses either a DNA or amino acid ‘seed’ query to: (i) automatically identify and retrieve gene family homologs from a genomic database, (ii) characterize gene structure and (iii) perform phylogenetic analysis. Due to its high speed, TARGeT is also able to characterize very large gene families, including transposable elements (TEs).

::DEVELOPER

TARGet team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Yujun Han, James M. Burnette III and Susan R. Wessler
TARGeT: a web-based pipeline for retrieving and characterizing gene and transposable element families from genomic sequences
Nucl. Acids Res. (2009) 37 (11): e78.

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