Tag: Transcriptomics Data

PIVOT v1.0.1 – Platform for Interactive analysis and Visualization Of Transcriptomics data

PIVOT v1.0.1

:: DESCRIPTION

PIVOT is an R-based platform that wraps open source transcriptome analysis packages with a uniform user interface and graphical data management that allows non-programmers to interactively explore transcriptomics data.

::DEVELOPER

the Kim Laboratory

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux
  • R

:: DOWNLOAD

PIVOT

:: MORE INFORMATION

Citation

Zhu Q, Fisher SA, Dueck H, Middleton S, Khaladkar M, Kim J.
PIVOT: platform for interactive analysis and visualization of transcriptomics data.
BMC Bioinformatics. 2018 Jan 5;19(1):6. doi: 10.1186/s12859-017-1994-0. PMID: 29304726; PMCID: PMC5756333.

RNAMiner – Bioinformatics Protocol for Mining Large RNA-Seq Transcriptomics Data

RNAMiner

:: DESCRIPTION

RNAMiner has been developed to convert gigabytes of raw RNA-Seq data into kilobytes of valuable biological knowledge through a five-step data mining and knowledge discovery process.

::DEVELOPER

RNAMiner team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Li J, Hou J, Sun L, Wilkins JM, Lu Y, et al. (2015)
From Gigabyte to Kilobyte: A Bioinformatics Protocol for Mining Large RNA-Seq Transcriptomics Data.
PLoS ONE 10(4): e0125000.

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