RASTtk 1.3.0

:: DESCRIPTION

RASTtk (the Rapid Annotation using Subsystem Technology tool kit) is a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes.

::DEVELOPER

:: SCREENSHOTS

N/A

:: REQUIREMENTS

MacOsX / Linux

:: DOWNLOAD

:: MORE INFORMATION

Citation:

RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes.
Brettin T, Davis JJ, Disz T, Edwards RA, Gerdes S, Olsen GJ, Olson R, Overbeek R, Parrello B, Pusch GD, Shukla M, Thomason JA 3rd, Stevens R, Vonstein V, Wattam AR, Xia F.
Sci Rep. 2015 Feb 10;5:8365. doi: 10.1038/srep08365.

STAMP 1.1

:: DESCRIPTION

STAMP is a newly developed web server that is designed to support the study of DNA-binding motifs. STAMP may be used to query motifs against databases of known motifs; the software aligns input motifs against the chosen database (or alternatively against a user-provided dataset), and lists of the highest-scoring matches are returned. Such similarity-search functionality is expected to facilitate the identification of transcription factors that potentially interact with newly discovered motifs.

:: DEVELOPER

Benos Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

STAMP

:: MORE INFORMATION

Citation:

S Mahony, PV Benos,
“STAMP: a web tool for exploring DNA-binding motif similarities“,
Nucleic Acids Research (2007) 35(Web Server issue):W253-W258.

Tag: Tool-kit

RASTtk 1.3.0 – Rapid Annotation using Subsystem Technology tool kit

RASTtk 1.3.0

STAMP 1.1 – Tool-kit for DNA Motif Comparison

STAMP 1.1