Tinker 8.9.3 – Software Tools for Molecular Design

Tinker 8.9.3

:: DESCRIPTION

TINKER molecular modeling software is a complete and general package for molecular mechanics and dynamics, with some special features for biopolymers. TINKER has the ability to use any of several common parameter sets, such as Amber (ff94, ff96, ff98, ff99, ff99SB), CHARMM (19, 22, 22CMAP), Allinger MM (MM2-1991 and MM3-2000), OPLS (OPLS-UA, OPLS-AA), Merck Molecular Force Field (MMFF), Liam Dang’s polarizable potentials, and our own AMOEBA polarizable atomic multipole force field. Parameter sets for other standard force fields such as GROMOS, UFF, ENCAD and MM4 are under consideration for future releases.

::DEVELOPER

Jay Ponder Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Mac /  Linux

:: DOWNLOAD

Tinker

:: MORE INFORMATION

TINKER – Design Metabolic Paths using the Known Universe of Enzymes and Reactions

TINKER

:: DESCRIPTION

TINKER is a metabolic pathway design/search tool. It compiles the entire set of known reactions and compounds from the latest version of the Rhea database and converts this data into a directed graph

::DEVELOPER

OSS-Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Java

:: DOWNLOAD

 TINKER

:: MORE INFORMATION

Citation

Metabolic tinker: an online tool for guiding the design of synthetic metabolic pathways.
McClymont K, Soyer OS.
Nucleic Acids Res. 2013 Jun;41(11):e113. doi: 10.1093/nar/gkt234.

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