Tag: Spot

MASQOT-GUI 1.0.1 – Two-channel Microarray Spot Quality Control

MASQOT-GUI 1.0.1

:: DESCRIPTION

MASQOT-GUI provides an open-source, platform-independent software pipeline for two-channel microarray spot quality control. This includes gridding, segmentation, quantification, quality assessment and data visualization. It hosts three independent applications (MASQOTGrid, MASQOTSeg and MASQOTView) for this purpose with interactions between the tools as well as import and export support for external software.

::DEVELOPER

MASQOT-GUI team

:: SCREENSHOTS

MASQOT-GUI

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Java

:: DOWNLOAD

 MASQOT-GUI

:: MORE INFORMATION

Citation

Bioinformatics. 2006 Oct 15;22(20):2554-5. Epub 2006 Aug 9.
MASQOT-GUI: spot quality assessment for the two-channel microarray platform.
Bylesjö M1, Sjödin A, Eriksson D, Antti H, Moritz T, Jansson S, Trygg J.

BEADS 1.1.13 – Spot Detection on 2-D Gel Images

BEADS 1.1.13

:: DESCRIPTION

BEADS is a program for spot detection on 2-D gel images. It is based on an analogy with beads flowing uphill on the surface of the gel image and on the analysis of their paths

::DEVELOPER

pappso (Plate-forme d’analyses protéomiques de Paris Sud-Ouest)

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows/ MacOsX / Linux

:: DOWNLOAD

  BEADS

:: MORE INFORMATION

Citation

Proteomics. 2008 Dec;8(23-24):4914-8. doi: 10.1002/pmic.200800644.
A method based on bead flows for spot detection on 2-D gel images.
Langella O, Zivy M.

Spot 3.2 – Analysis of Microarray Images

Spot 3.2

:: DESCRIPTION

Spot is a software package for the analysis of microarray images.cDNA microarrays, or ‘DNA chips’, are used to analyse the expression levels of large collections of genes. Spot is a microarray spot detection and characterisation package which extracts more meaningful numerical information than other comparable packages.

::DEVELOPER

CSIRO Mathematical and Information Sciences

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

 Spot

:: MORE INFORMATION

Seg2Dgel 0.5.12 – 2D Electrophoresis Gel Spot Segmenter

Seg2Dgel 0.5.12

:: DESCRIPTION

Seg2Dgel is a Java 2D-electrophoretic gel segmentation program for finding and measuring the integrated density and position of spots in a gel or image with similar types of data. We are enhancing it to segment spots in 2D LC-MS images.

::DEVELOPER

Biomedical Image Processing and Database Analysis Group

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / MacOsX / Linux
  • Java

:: DOWNLOAD

 Seg2Dgel

:: MORE INFORMATION

 

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