:: DESCRIPTION
SpEED is a software program that computes highly sensitive multiple spaced seeds.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
SpEED: fast computation of sensitive spaced seeds.
Ilie L, Ilie S, Bigvand AM.
Bioinformatics. 2011 Sep 1;27(17):2433-4. doi: 10.1093/bioinformatics/btr368.
:: DESCRIPTION
SPEED is a signaling pathway annotation enrichment analysis tool with annotations based on evidences from pathway perturbation experiments. Thus, genes are annotated based on causal influences of pathway perturbations as opposed to pathway memberships alone. Identifying modulated pathways upstream of differentially expressed genes can facilitate the understanding of involved regulatory mechanisms. Currently only human genes and pathways are supported.
::DEVELOPER
Computational Biology Laboratory – Boston University
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Parikh JR, Klinger B, Xia Y, Marto JA, Blüthgen N.
Discovering causal signaling pathways through gene-expression patterns.
Nucleic Acids Res. 2010 Jul 1;38 Suppl:W109-17.
