:: DESCRIPTION
SNV-PPILP is a fast and easy to use tool for refining GATK’s Unified Genotyper SNV calls, for multiple samples assumed to form a phylogeny.
::DEVELOPER
GSA (Genome-scale algorithmics) group
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
SNV-PPILP: Refined SNV calling for tumor data using perfect phylogenies and ILP.
van Rens KE, Mäkinen V, Tomescu AI.
Bioinformatics. 2014 Nov 13. pii: btu755
:: DESCRIPTION
MethylExtract is a user friendly tool to generate i) high quality, whole genome methylation maps and ii) to detect sequence variation within the same sample preparation.
::DEVELOPER
The group of computational genomics and bioinformatics at Granada University (Spain)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Version 2. F1000Res. 2013 Oct 15 [revised 2014 Feb 21];2:217. doi: 10.12688/f1000research.2-217.v2. eCollection 2013.
MethylExtract: High-Quality methylation maps and SNV calling from whole genome bisulfite sequencing data.
Barturen G, Rueda A, Oliver JL, Hackenberg M.
