MCF – Image Segmentation Algorithms for automated Single Cell Analysis

MCF

:: DESCRIPTION

The MCF (Model Controlled Flooding) image segmentation algorithms and example code for automated single cell analysis.

::DEVELOPER

Mike West

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Matlab

:: DOWNLOAD

 MCF

:: MORE INFORMATION

Citation

Model-controlled flooding with applications to image reconstruction and segmentation.
Wang Q, West M.
J Electron Imaging. 2012 Jun 22;21(2). doi:pii: 023020.

SCATS – Single Cell Analysis of Transcript Splicing

SCATS

:: DESCRIPTION

SCATS is a statistical tool to detect differential alternative splicing events using single-cell RNA-seq.

::DEVELOPER

Wang Genomics Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Pyton

:: DOWNLOAD

SCATS

:: MORE INFORMATION

Citation

Hu Y, Wang K, Li M.
Detecting differential alternative splicing events in scRNA-seq with or without Unique Molecular Identifiers.
PLoS Comput Biol. 2020 Jun 5;16(6):e1007925. doi: 10.1371/journal.pcbi.1007925. PMID: 32502143; PMCID: PMC7299405.

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