ELaSTIC 1.90 – Rapid Identification and Clustering of Similar Sequences

ELaSTIC 1.90

:: DESCRIPTION

ELaSTIC is a software suite for a rapid identification and clustering of similar sequences from large-scale biological sequence collections. At its core is an efficient MinHash-based strategy to detect similar sequence pairs without aligning all sequences against each other.

::DEVELOPER

Jaroslaw Zola

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 ELaSTIC

:: MORE INFORMATION

Citation

J. Zola,
“Constructing Similarity Graphs from Large-scale Biological Sequence Collections”,
In Proc. IEEE International Workshop on High Performance Computational Biology (HiCOMB), 2014.

Oligonucleotide Search 20v2 – Evaluating Propensity of primers to Hybridize to Similar Sequences

Oligonucleotide Search 20v2

:: DESCRIPTION

Oligonucleotide Search is a web-based tool for evaluating the propensity of primers to hybridize to similar sequences throughout the genome

::DEVELOPER

Krawetz Lab

:: SCREENSHOTS

Oligonucleotides

:: REQUIREMENTS

  • Windows 

:: DOWNLOAD

 Oligonucleotide Search

:: MORE INFORMATION

Citation

Syst Biol Reprod Med. 2008 Mar-Apr;54(2):97-108.
The KLAB Toolbox: a suite of in-house software applications for epigenetic analysis.
Naismith L, Lalancette C, Platts AE, Krawetz SA.

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