Flexbar 3.5 – Flexible Barcode and Adapter Removal for Sequencing Platforms

Flexbar 3.5

:: DESCRIPTION

Flexbar preprocesses high-throughput sequencing data efficiently. It demultiplexes barcoded runs and removes adapter sequences. Moreover, trimming and filtering features are provided. Flexbar increases read mapping rates and improves genome and transcriptome assemblies. It supports next-generation sequencing data in fasta/q and csfasta/q format from Illumina, Roche 454, and the SOLiD platform.

::DEVELOPER

Dieterich lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows/ MacOsX

:: DOWNLOAD

 Flexbar

:: MORE INFORMATION

Citation:

FLEXBAR—Flexible Barcode and Adapter Processing for Next-Generation Sequencing Platforms
Matthias Dodt , Johannes T. Roehremail, Rina Ahmedemail and Christoph Dieterich
Biology 2012, 1(3), 895-905; doi:10.3390/biology1030895

Segminator II 0.1.1 – Analysis of viral data generated using the 454 Life Sciences Sequencing Platform

Segminator II 0.1.1

:: DESCRIPTION

 Segminatoris a tool for extracting data from reads generated using the 454 Life Science sequencing platform

::DEVELOPER

John Archer

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / MacOsX / Windows
  • Java

:: DOWNLOAD

 Segminator

:: MORE INFORMATION

Citation

Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II.
Archer J, Baillie G, Watson SJ, Kellam P, Rambaut A, Robertson DL.
BMC Bioinformatics. 2012 Mar 23;13:47.

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