GoMiner organizes and allows the visualization of large sets of genes based on Gene Ontology classifications.GoMiner is a tool for biological interpretation of ‘omic’ data – including data from gene expression microarrays. Omic experiments often generate lists of dozens or hundreds of genes that differ in expression between samples, raising the question
LightAssembler is a lightweight assembly algorithm designed to be executed on a desktop machine. It uses a pair of cache oblivious Bloom filters, one holding a uniform sample of g-spaced sequenced k-mers and the other holding k-mers classified as likely correct, using a simple statistical test.
Gramene is a curated, open-source, data resource for comparative genome analysis in the grasses. The goal is to facilitate the study of cross-species homology relationships using information derived from public projects involved in genomic and EST sequencing, protein structure and function analysis, genetic and physical mapping, interpretation of biochemical pathways, gene and QTL localization and descriptions of phenotypic characters and mutations.
ZikaVR, an integrative multi-omics platform dedicated to the Zika virus genomic and proteomic analysis along with comparative genomics and therapeutic knowledge.
BRM (Bioinformatics Resource Manager) is a software program that provides robust middleware architecture to link scientific applications and heterogeneous data sources. Bioinformaticists are using this framework to automate multidisciplinary data mining processes used for high-throughput molecular profiling. The software created by our research team will allow communication between different software tools from within BRM.
