Tag: Regulatory Model

HRM – Hybrid Regulatory Models

HRM

:: DESCRIPTION

HRM is a general statistical inference framework for stochastic transcription-translation networks.

::DEVELOPER

Andrea Ocone ,Guido Sanguinetti

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux/ MacOsX
  • MatLab

:: DOWNLOAD

 HRM

:: MORE INFORMATION

Citation:

Bioinformatics. 2013 Apr 1;29(7):910-6. doi: 10.1093/bioinformatics/btt069. Epub 2013 Feb 13.
Hybrid regulatory models: a statistically tractable approach to model regulatory network dynamics.
Ocone A1, Millar AJ, Sanguinetti G.

targetedRetrieval 120705 – Targeted Retrieval of Gene Expression Measurements Using Regulatory Models

targetedRetrieval 120705

:: DESCRIPTION

targetedRetrieval is a model for the regulation of specific genes from a data repository and exploit it to construct a similarity metric for an information retrieval task.

::DEVELOPER

Probabilistic Machine Learning

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows /MacOsX
  • R package

:: DOWNLOAD

  targetedRetrieval

:: MORE INFORMATION

Citation

Elisabeth Georgii, Jarkko Salojärvi, Mikael Brosché, Jaakko Kangasjärvi, and Samuel Kaski.
Targeted retrieval of gene expression measurements using regulatory models.
Bioinformatics (2012) 28 (18): 2349-2356.

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